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MorphologyScene
__init__ [#35]
__init__ [#35]1
def __init__(self, *args, **kwargs):
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_add_neurons_get_colors [#62]
_add_neurons_get_colors [#62]1
def _add_neurons_get_colors(self, neurons, color):
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Parses color argument for self.add_neurons
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​
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:para, neurons: list of Neuron object or file paths...
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​
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:param color: default None. Can be:
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​
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- None: each neuron is colored according to the default color
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​
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- color: rbg, hex etc. If a single color is passed all neurons will
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have that color
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​
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- cmap: str with name of a colormap: neurons are colored based on
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their sequential order and cmap
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​
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- dict: a dictionary specifying a color for soma, dendrites and axon
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actors, will be the same for all neurons
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​
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- list: a list of length = number of neurons with either a single
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color for each neuron
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​
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or a dictionary of colors for each neuron
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add_neurons [#180]
add_neurons [#180]1
def add_neurons(self, neurons, color=None, display_axon=True,
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display_dendrites=True, alpha=1, neurite_radius=None):
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Adds rendered morphological data of neurons reconstructions downloaded
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from the
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​
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Mouse Light project at Janelia, neuromorpho.org and other sources.
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​
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Accepts neurons argument as:
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- file(s) with morphological data
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​
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- vedo mesh actor(s) of neurons reconstructions
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- dictionary or list of dictionary with actors for different neuron
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parts
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:param self: instance of brainrender Scene to use to render neurons
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​
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:param neurons: str, list, dict. File(s) with neurons data or list of
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rendered neurons.
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:param display_axon, display_dendrites: if set to False the
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corresponding neurite is not rendered
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:param color: default None. Can be:
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​
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- None: each neuron is colored according to the default color
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​
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- color: rbg, hex etc. If a single color is passed all neurons will
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have that color
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​
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- cmap: str with name of a colormap: neurons are colored based on
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their sequential order and cmap
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​
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- dict: a dictionary specifying a color for soma, dendrites and axon
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actors, will be the same for all neurons
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​
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- list: a list of length = number of neurons with either a single
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color for each neuron
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​
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or a dictionary of colors for each neuron
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​
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:param alpha: float in range 0,1. Neurons transparency
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​
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:param neurite_radius: float > 0 , radius of tube actor representing
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neurites
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